PF08946


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08946, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08946
Description Osmosensory transporter coiled coil

Occurence in the database

PF08946 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1615 FBDBKF_10640 92450 93952 -1 proP glycine betaine/L-proline transporter ProP Morganella morganii S1
1 group_1615 EHELCC_14975 92440 93942 -1 proP glycine betaine/L-proline transporter ProP Morganella morganii S2
2 group_1615 NLDBIP_14805 92440 93942 -1 proP glycine betaine/L-proline transporter ProP Morganella morganii S4
3 group_1615 LHKJJB_14540 47784 49286 1 proP glycine betaine/L-proline transporter ProP Morganella morganii S3
4 group_1615 HKOGLL_13160 47784 49286 1 proP glycine betaine/L-proline transporter ProP Morganella morganii S5
5 group_1615 F4V73_RS14350 94929 96431 -1 proP glycine betaine/L-proline transporter ProP Morganella psychrotolerans
6 group_1615 PMI_RS15970 3547495 3548997 -1 proP glycine betaine/L-proline transporter ProP Proteus mirabilis HI4320