PF07973


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07973, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07973
Description Threonyl and Alanyl tRNA synthetase second additional domain

Occurence in the database

PF07973 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1811 FBDBKF_13430 62469 64400 -1 thrS threonine--tRNA ligase Morganella morganii S1
1 group_2034 FBDBKF_15240 59895 62522 1 alaS alanine--tRNA ligase Morganella morganii S1
2 group_3107 FBDBKF_19630 10087 10719 -1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S1
3 group_1811 EHELCC_08665 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S2
4 group_2034 EHELCC_11005 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S2
5 group_3107 EHELCC_16920 45314 45946 -1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S2
6 group_1811 NLDBIP_08990 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S4
7 group_2034 NLDBIP_11350 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S4
8 group_3107 NLDBIP_17530 9820 10452 1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S4
9 group_1811 LHKJJB_05275 44437 46368 -1 thrS threonine--tRNA ligase Morganella morganii S3
10 group_2034 LHKJJB_11210 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S3
11 group_3107 LHKJJB_17450 9820 10452 1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S3
12 group_1811 HKOGLL_05640 195382 197313 1 thrS threonine--tRNA ligase Morganella morganii S5
13 group_2034 HKOGLL_09820 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S5
14 group_3107 HKOGLL_17265 9820 10452 1 alaX Ser-tRNA(Ala) deacylase AlaX (editing enzyme) Morganella morganii S5
15 group_1811 F4V73_RS03335 711415 713343 1 thrS threonine--tRNA ligase Morganella psychrotolerans
16 group_3107 F4V73_RS10425 197681 198313 -1 metal-dependent hydrolase Morganella psychrotolerans
17 group_2034 F4V73_RS12205 21879 24506 -1 alaS alanine--tRNA ligase Morganella psychrotolerans
18 group_2034 PMI_RS01800 427567 430194 1 alaS alanine--tRNA ligase Proteus mirabilis HI4320
19 group_1811 PMI_RS05025 1098276 1100204 1 thrS threonine--tRNA ligase Proteus mirabilis HI4320