PF07498


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07498, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07498
Description Rho termination factor, N-terminal domain

Occurence in the database

PF07498 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1327 FBDBKF_08215 20281 21540 1 rho transcription termination factor Rho Morganella morganii S1
1 group_1327 EHELCC_13310 142185 143444 -1 rho transcription termination factor Rho Morganella morganii S2
2 group_1327 NLDBIP_13650 142185 143444 -1 rho transcription termination factor Rho Morganella morganii S4
3 group_1327 LHKJJB_12905 18999 20258 1 rho transcription termination factor Rho Morganella morganii S3
4 group_1327 HKOGLL_12125 142185 143444 -1 rho transcription termination factor Rho Morganella morganii S5
5 group_1327 F4V73_RS18765 21442 22701 1 rho transcription termination factor Rho Morganella psychrotolerans
6 group_1327 PMI_RS16475 3633442 3634701 1 rho transcription termination factor Rho Proteus mirabilis HI4320