PF05958
Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF05958
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
Description
External link |
PF05958 |
Description |
tRNA (Uracil-5-)-methyltransferase |
Occurence in the database
PF05958 is associated with 21 different
proteins
|
The 21 proteins are classified into 3 different orthogroup(s)
|
|
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1264 |
FBDBKF_07000 |
63975 |
65099 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S1 |
1 |
group_1683 |
FBDBKF_10850 |
137213 |
138313 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S1 |
2 |
group_1912 |
FBDBKF_13990 |
94602 |
95984 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S1 |
3 |
group_1264 |
EHELCC_03970 |
121087 |
122211 |
-1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S2 |
4 |
group_1912 |
EHELCC_11665 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S2 |
5 |
group_1683 |
EHELCC_19435 |
7999 |
9099 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S2 |
6 |
group_1264 |
NLDBIP_03970 |
120883 |
122007 |
-1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S4 |
7 |
group_1912 |
NLDBIP_12005 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S4 |
8 |
group_1683 |
NLDBIP_15015 |
137203 |
138303 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S4 |
9 |
group_1264 |
LHKJJB_09800 |
120997 |
122121 |
-1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S3 |
10 |
group_1912 |
LHKJJB_11865 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S3 |
11 |
group_1683 |
LHKJJB_14330 |
3423 |
4523 |
1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S3 |
12 |
group_1264 |
HKOGLL_09175 |
68931 |
70055 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella morganii S5 |
13 |
group_1912 |
HKOGLL_10480 |
179478 |
180860 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella morganii S5 |
14 |
group_1683 |
HKOGLL_12950 |
3423 |
4523 |
1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella morganii S5 |
15 |
group_1264 |
F4V73_RS01190 |
251541 |
252665 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Morganella psychrotolerans |
16 |
group_1912 |
F4V73_RS12845 |
172118 |
173458 |
-1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Morganella psychrotolerans |
17 |
group_1683 |
F4V73_RS16900 |
3301 |
4398 |
1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Morganella psychrotolerans |
18 |
group_1912 |
PMI_RS01040 |
256105 |
257430 |
1 |
rlmD |
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD |
Proteus mirabilis HI4320 |
19 |
group_1264 |
PMI_RS03335 |
736283 |
737416 |
1 |
rlmC |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC |
Proteus mirabilis HI4320 |
20 |
group_1683 |
PMI_RS16045 |
3565442 |
3566539 |
-1 |
trmA |
tRNA (uridine(54)-C5)-methyltransferase TrmA |
Proteus mirabilis HI4320 |