PF05958


Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF05958
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF05958
Description tRNA (Uracil-5-)-methyltransferase

Occurence in the database

PF05958 is associated with 21 different proteins
The 21 proteins are classified into 3 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1264 FBDBKF_07000 63975 65099 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S1
1 group_1683 FBDBKF_10850 137213 138313 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S1
2 group_1912 FBDBKF_13990 94602 95984 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S1
3 group_1264 EHELCC_03970 121087 122211 -1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S2
4 group_1912 EHELCC_11665 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S2
5 group_1683 EHELCC_19435 7999 9099 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S2
6 group_1264 NLDBIP_03970 120883 122007 -1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S4
7 group_1912 NLDBIP_12005 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S4
8 group_1683 NLDBIP_15015 137203 138303 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S4
9 group_1264 LHKJJB_09800 120997 122121 -1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S3
10 group_1912 LHKJJB_11865 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S3
11 group_1683 LHKJJB_14330 3423 4523 1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S3
12 group_1264 HKOGLL_09175 68931 70055 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella morganii S5
13 group_1912 HKOGLL_10480 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S5
14 group_1683 HKOGLL_12950 3423 4523 1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella morganii S5
15 group_1264 F4V73_RS01190 251541 252665 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Morganella psychrotolerans
16 group_1912 F4V73_RS12845 172118 173458 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella psychrotolerans
17 group_1683 F4V73_RS16900 3301 4398 1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Morganella psychrotolerans
18 group_1912 PMI_RS01040 256105 257430 1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Proteus mirabilis HI4320
19 group_1264 PMI_RS03335 736283 737416 1 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Proteus mirabilis HI4320
20 group_1683 PMI_RS16045 3565442 3566539 -1 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA Proteus mirabilis HI4320