PF05876


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05876, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 4 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05876
Description Phage terminase large subunit gpA, ATPase domain

Occurence in the database

PF05876 is associated with 4 different proteins (see tab "Protein list" and "Profile")
The 4 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2903 FBDBKF_13120 16411 18525 -1 Phage terminase, large subunit Morganella morganii S1
1 group_2903 EHELCC_19465 3846 5960 -1 Phage terminase, large subunit Morganella morganii S2
2 group_2903 HKOGLL_05950 241257 243371 1 Phage terminase, large subunit Morganella morganii S5
3 group_2903 F4V73_RS02085 446341 448452 1 phage terminase large subunit family protein Morganella psychrotolerans