PF05449


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05449, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05449
Description Putative 3TM holin, Phage_holin_3

Occurence in the database

PF05449 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3188 FBDBKF_01550 1186 1458 1 Holin Morganella morganii S1
1 group_3350 FBDBKF_11350 73737 74021 1 Holin Morganella morganii S1
2 group_3188 EHELCC_02020 389006 389278 1 Holin Morganella morganii S2
3 group_3350 EHELCC_17865 26694 26978 -1 Holin Morganella morganii S2
4 group_3188 NLDBIP_01440 290858 291130 -1 Holin Morganella morganii S4
5 group_3350 NLDBIP_05195 26520 26804 -1 Holin Morganella morganii S4
6 group_3188 LHKJJB_00595 101555 101827 1 Holin Morganella morganii S3
7 group_3350 LHKJJB_02075 4044 4328 -1 Holin Morganella morganii S3
8 group_3188 HKOGLL_00635 107066 107338 1 Holin Morganella morganii S5
9 group_3350 HKOGLL_15455 27484 27768 -1 Holin Morganella morganii S5