PF05170


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05170, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05170
Description AsmA family

Occurence in the database

PF05170 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1187 FBDBKF_06845 32858 34720 1 asmA outer membrane assembly protein AsmA Morganella morganii S1
1 group_1187 EHELCC_04125 151466 153328 -1 asmA outer membrane assembly protein AsmA Morganella morganii S2
2 group_1187 NLDBIP_04125 151262 153124 -1 asmA outer membrane assembly protein AsmA Morganella morganii S4
3 group_1187 LHKJJB_09955 151376 153238 -1 asmA outer membrane assembly protein AsmA Morganella morganii S3
4 group_1187 HKOGLL_09020 37814 39676 1 asmA outer membrane assembly protein AsmA Morganella morganii S5
5 group_1187 F4V73_RS00995 211519 213393 1 asmA outer membrane assembly protein AsmA Morganella psychrotolerans
6 group_1187 PMI_RS03205 707146 709077 1 asmA outer membrane assembly protein AsmA Proteus mirabilis HI4320