PF04971


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04971, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04971
Description Bacteriophage P21 holin S

Occurence in the database

PF04971 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3569 FBDBKF_18675 19502 19723 -1 Holin Morganella morganii S1
1 group_3569 EHELCC_15250 19502 19723 -1 Holin Morganella morganii S2
2 group_3569 NLDBIP_15780 19502 19723 -1 Holin Morganella morganii S4
3 group_3569 LHKJJB_16060 96963 97184 1 Holin Morganella morganii S3
4 group_3569 HKOGLL_15180 96175 96396 1 Holin Morganella morganii S5