PF04954


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04954, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04954
Description Siderophore-interacting protein

Occurence in the database

PF04954 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_598 FBDBKF_01795 47106 47930 -1 viuB NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains Morganella morganii S1
1 group_598 EHELCC_02265 434926 435750 -1 viuB NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains Morganella morganii S2
2 group_598 NLDBIP_01195 244386 245210 1 viuB NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains Morganella morganii S4
3 group_598 LHKJJB_00840 147475 148299 -1 viuB NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains Morganella morganii S3
4 group_598 HKOGLL_00880 152986 153810 -1 viuB NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains Morganella morganii S5
5 group_598 F4V73_RS04120 871360 872193 -1 siderophore-interacting protein Morganella psychrotolerans
6 group_598 PMI_RS06950 1521159 1522019 1 siderophore-interacting protein Proteus mirabilis HI4320