PF04613


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04613, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04613
Description UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD

Occurence in the database

PF04613 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1052 FBDBKF_05960 16919 17947 -1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Morganella morganii S1
1 group_1052 EHELCC_09005 17491 18519 -1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Morganella morganii S2
2 group_1052 NLDBIP_09385 17491 18519 -1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Morganella morganii S4
3 group_1052 LHKJJB_08370 198719 199747 1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Morganella morganii S3
4 group_1052 HKOGLL_07920 198719 199747 1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Morganella morganii S5
5 group_1052 F4V73_RS15935 195384 196412 1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Morganella psychrotolerans
6 group_1052 PMI_RS11235 2472467 2473495 -1 lpxD UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase Proteus mirabilis HI4320