PF04575


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04575, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04575
Description Surface lipoprotein assembly modifier

Occurence in the database

PF04575 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2142 FBDBKF_16095 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S1
1 group_2142 EHELCC_16130 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S2
2 group_2142 NLDBIP_17210 53094 54446 1 DUF560 domain-containing protein Morganella morganii S4
3 group_2142 LHKJJB_17130 56196 57548 1 DUF560 domain-containing protein Morganella morganii S3
4 group_2142 HKOGLL_16710 7724 9076 -1 DUF560 domain-containing protein Morganella morganii S5
5 group_2142 F4V73_RS17520 137609 138724 1 surface lipoprotein assembly modifier Morganella psychrotolerans
6 group_2142 PMI_RS15440 3430155 3431507 1 surface lipoprotein assembly modifier Proteus mirabilis HI4320