PF04563


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04563, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04563
Description RNA polymerase beta subunit

Occurence in the database

PF04563 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2289 FBDBKF_17580 4838 8866 1 rpoB DNA-directed RNA polymerase subunit beta Morganella morganii S1
1 group_2289 EHELCC_18065 4214 8242 1 rpoB DNA-directed RNA polymerase subunit beta Morganella morganii S2
2 group_2289 NLDBIP_18085 30495 34523 -1 rpoB DNA-directed RNA polymerase subunit beta Morganella morganii S4
3 group_2289 LHKJJB_18280 30495 34523 -1 rpoB DNA-directed RNA polymerase subunit beta Morganella morganii S3
4 group_2289 HKOGLL_17920 4214 8242 1 rpoB DNA-directed RNA polymerase subunit beta Morganella morganii S5
5 group_2289 F4V73_RS14960 223395 227423 1 rpoB DNA-directed RNA polymerase subunit beta Morganella psychrotolerans
6 group_2289 PMI_RS13755 3057814 3061842 -1 rpoB DNA-directed RNA polymerase subunit beta Proteus mirabilis HI4320