PF04400


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04400, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04400
Description (Na+)-NQR maturation NqrM

Occurence in the database

PF04400 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2021 FBDBKF_15165 43683 43913 1 nqrM Na+-NQR maturation protein NqrM Morganella morganii S1
1 group_2021 EHELCC_11080 40993 41223 -1 nqrM Na+-NQR maturation protein NqrM Morganella morganii S2
2 group_2021 NLDBIP_11425 40993 41223 -1 nqrM Na+-NQR maturation protein NqrM Morganella morganii S4
3 group_2021 LHKJJB_11285 40993 41223 -1 nqrM Na+-NQR maturation protein NqrM Morganella morganii S3
4 group_2021 HKOGLL_09895 40993 41223 -1 nqrM Na+-NQR maturation protein NqrM Morganella morganii S5
5 group_2021 F4V73_RS12280 40702 40929 -1 nqrM (Na+)-NQR maturation NqrM Morganella psychrotolerans
6 group_2021 PMI_RS01720 408779 409006 1 nqrM (Na+)-NQR maturation NqrM Proteus mirabilis HI4320