PF04357


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04357, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04357
Description TamB, inner membrane protein subunit of TAM complex

Occurence in the database

PF04357 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1383 FBDBKF_08545 89669 93439 1 tamB Autotransporter translocation and assembly protein TamB Morganella morganii S1
1 group_1383 EHELCC_12980 70286 74056 -1 tamB Autotransporter translocation and assembly protein TamB Morganella morganii S2
2 group_1383 NLDBIP_13320 70286 74056 -1 tamB Autotransporter translocation and assembly protein TamB Morganella morganii S4
3 group_1383 LHKJJB_13235 88387 92157 1 tamB Autotransporter translocation and assembly protein TamB Morganella morganii S3
4 group_1383 HKOGLL_11795 70286 74056 -1 tamB Autotransporter translocation and assembly protein TamB Morganella morganii S5
5 group_1383 F4V73_RS09770 56127 59900 1 translocation/assembly module TamB domain-containing protein Morganella psychrotolerans
6 group_1383 PMI_RS16880 3716736 3720557 1 translocation/assembly module TamB domain-containing protein Proteus mirabilis HI4320