PF04307


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04307, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04307
Description LexA-binding, inner membrane-associated putative hydrolase

Occurence in the database

PF04307 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1820 FBDBKF_13480 73897 74454 1 ybcI metal-dependent hydrolase Morganella morganii S1
1 group_1820 EHELCC_08615 200737 201294 -1 ybcI metal-dependent hydrolase Morganella morganii S2
2 group_1820 NLDBIP_08940 200737 201294 -1 ybcI metal-dependent hydrolase Morganella morganii S4
3 group_1820 LHKJJB_05325 55865 56422 1 ybcI metal-dependent hydrolase Morganella morganii S3
4 group_1820 HKOGLL_05590 185328 185885 -1 ybcI metal-dependent hydrolase Morganella morganii S5
5 group_1820 F4V73_RS03285 701323 701874 -1 metal-dependent hydrolase Morganella psychrotolerans
6 group_1820 PMI_RS04955 1086068 1086634 -1 metal-dependent hydrolase Proteus mirabilis HI4320