PF04295


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04295, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04295
Description D-galactarate dehydratase/Altronate hydrolase, second domain

Occurence in the database

PF04295 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3184 FBDBKF_01515 302146 303741 -1 uxaA Altronate dehydratase Morganella morganii S1
1 group_3184 EHELCC_00030 5127 6722 1 uxaA Altronate dehydratase Morganella morganii S2
2 group_3184 NLDBIP_03430 673414 675009 -1 uxaA Altronate dehydratase Morganella morganii S4
3 group_3184 LHKJJB_04945 280655 282250 -1 uxaA Altronate dehydratase Morganella morganii S3
4 group_3184 HKOGLL_02100 5332 6927 1 uxaA Altronate dehydratase Morganella morganii S5