PF04290


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04290, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04290
Description Tripartite ATP-independent periplasmic transporters, DctQ component

Occurence in the database

PF04290 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2842 FBDBKF_10550 69185 69688 1 dctM TRAP-type C4-dicarboxylate transport system, small permease component YiaM Morganella morganii S1
1 group_2842 EHELCC_14885 69175 69678 1 dctM TRAP-type C4-dicarboxylate transport system, small permease component YiaM Morganella morganii S2
2 group_2842 NLDBIP_14715 69175 69678 1 dctM TRAP-type C4-dicarboxylate transport system, small permease component YiaM Morganella morganii S4
3 group_2842 LHKJJB_14630 72048 72551 -1 dctM TRAP-type C4-dicarboxylate transport system, small permease component YiaM Morganella morganii S3
4 group_2842 HKOGLL_13250 72048 72551 -1 dctM TRAP-type C4-dicarboxylate transport system, small permease component YiaM Morganella morganii S5
5 group_2842 F4V73_RS14260 71655 72158 1 TRAP transporter small permease Morganella psychrotolerans