PF03949
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03949, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF03949 |
Description |
Malic enzyme, NAD binding domain |
Occurence in the database
PF03949 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1180 |
FBDBKF_06805 |
23653 |
25350 |
-1 |
sfcA |
Malic enzyme |
Morganella morganii S1 |
1 |
group_1822 |
FBDBKF_13505 |
77996 |
80275 |
-1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Morganella morganii S1 |
2 |
group_1180 |
EHELCC_04165 |
160836 |
162533 |
1 |
sfcA |
Malic enzyme |
Morganella morganii S2 |
3 |
group_1822 |
EHELCC_08590 |
194916 |
197195 |
1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Morganella morganii S2 |
4 |
group_1180 |
NLDBIP_04165 |
160632 |
162329 |
1 |
sfcA |
Malic enzyme |
Morganella morganii S4 |
5 |
group_1822 |
NLDBIP_08915 |
194916 |
197195 |
1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Morganella morganii S4 |
6 |
group_1822 |
LHKJJB_05350 |
59964 |
62243 |
-1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Morganella morganii S3 |
7 |
group_1180 |
LHKJJB_09995 |
160746 |
162443 |
1 |
sfcA |
Malic enzyme |
Morganella morganii S3 |
8 |
group_1822 |
HKOGLL_05565 |
179507 |
181786 |
1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Morganella morganii S5 |
9 |
group_1180 |
HKOGLL_08980 |
28609 |
30306 |
-1 |
sfcA |
Malic enzyme |
Morganella morganii S5 |
10 |
group_1180 |
F4V73_RS00945 |
200394 |
202091 |
-1 |
|
NAD-dependent malic enzyme |
Morganella psychrotolerans |
11 |
group_1822 |
F4V73_RS03255 |
693704 |
695983 |
1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Morganella psychrotolerans |
12 |
group_1180 |
PMI_RS03165 |
697927 |
699624 |
-1 |
|
NAD-dependent malic enzyme |
Proteus mirabilis HI4320 |
13 |
group_1822 |
PMI_RS07555 |
1649341 |
1651623 |
-1 |
maeB |
NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase |
Proteus mirabilis HI4320 |