PF03946


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03946, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03946
Description Ribosomal protein L11, N-terminal domain

Occurence in the database

PF03946 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2285 FBDBKF_17555 2106 2534 1 rplK 50S ribosomal protein L11 Morganella morganii S1
1 group_2285 EHELCC_18040 1482 1910 1 rplK 50S ribosomal protein L11 Morganella morganii S2
2 group_2285 NLDBIP_18110 36827 37255 -1 rplK 50S ribosomal protein L11 Morganella morganii S4
3 group_2285 LHKJJB_18305 36827 37255 -1 rplK 50S ribosomal protein L11 Morganella morganii S3
4 group_2285 HKOGLL_17895 1482 1910 1 rplK 50S ribosomal protein L11 Morganella morganii S5
5 group_2285 F4V73_RS14940 220658 221086 1 rplK 50S ribosomal protein L11 Morganella psychrotolerans
6 group_2285 PMI_RS13775 3064155 3064583 -1 rplK 50S ribosomal protein L11 Proteus mirabilis HI4320