PF03843


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03843, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03843
Description Outer membrane lipoprotein Slp family

Occurence in the database

PF03843 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_651 FBDBKF_02220 134749 135339 1 slp Starvation-inducible outer membrane lipoprotein Slp Morganella morganii S1
1 group_651 EHELCC_02690 522569 523159 1 slp Starvation-inducible outer membrane lipoprotein Slp Morganella morganii S2
2 group_651 NLDBIP_00770 156977 157567 -1 slp Starvation-inducible outer membrane lipoprotein Slp Morganella morganii S4
3 group_651 LHKJJB_01265 235118 235708 1 slp Starvation-inducible outer membrane lipoprotein Slp Morganella morganii S3
4 group_651 HKOGLL_01305 240629 241219 1 slp Starvation-inducible outer membrane lipoprotein Slp Morganella morganii S5
5 group_651 F4V73_RS04590 971474 972073 1 Slp family lipoprotein Morganella psychrotolerans
6 group_651 PMI_RS05620 1225843 1226436 1 Slp family lipoprotein Proteus mirabilis HI4320