PF03553


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03553, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03553
Description Na+/H+ antiporter family

Occurence in the database

PF03553 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1608 FBDBKF_10530 64119 65564 -1 nhaC Na+/H+ antiporter NhaC/MleN Morganella morganii S1
1 group_1608 EHELCC_14865 64109 65554 -1 nhaC Na+/H+ antiporter NhaC/MleN Morganella morganii S2
2 group_1608 NLDBIP_14695 64109 65554 -1 nhaC Na+/H+ antiporter NhaC/MleN Morganella morganii S4
3 group_1608 LHKJJB_14650 76172 77617 1 nhaC Na+/H+ antiporter NhaC/MleN Morganella morganii S3
4 group_1608 HKOGLL_13270 76172 77617 1 nhaC Na+/H+ antiporter NhaC/MleN Morganella morganii S5
5 group_1608 F4V73_RS14240 66383 67831 -1 Na+/H+ antiporter NhaC family protein Morganella psychrotolerans
6 group_1608 PMI_RS06155 1350151 1351626 -1 nhaC Na+/H+ antiporter NhaC Proteus mirabilis HI4320