PF03534


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03534, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03534
Description Salmonella virulence plasmid 65kDa B protein

Occurence in the database

PF03534 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_111 FBDBKF_00740 130002 134243 1 Putative toxin subunit Morganella morganii S1
1 group_3416 FBDBKF_13690 13304 17797 -1 Salmonella virulence plasmid 65kDa B protein Morganella morganii S1
2 group_111 FBDBKF_13715 32176 36618 -1 Toxin subunit Morganella morganii S1
3 group_111 EHELCC_00805 174625 178866 -1 Putative toxin subunit Morganella morganii S2
4 group_3416 EHELCC_11360 98180 102673 -1 Salmonella virulence plasmid 65kDa B protein Morganella morganii S2
5 group_111 EHELCC_11385 117052 121494 -1 Toxin subunit Morganella morganii S2
6 group_111 NLDBIP_02655 501270 505511 1 Putative toxin subunit Morganella morganii S4
7 group_3416 NLDBIP_11705 98180 102673 -1 Salmonella virulence plasmid 65kDa B protein Morganella morganii S4
8 group_111 NLDBIP_11730 117052 121494 -1 Toxin subunit Morganella morganii S4
9 group_111 LHKJJB_04170 108511 112752 1 Putative toxin subunit Morganella morganii S3
10 group_3416 LHKJJB_11565 98180 102673 -1 Salmonella virulence plasmid 65kDa B protein Morganella morganii S3
11 group_111 LHKJJB_11590 117052 121494 -1 Toxin subunit Morganella morganii S3
12 group_111 HKOGLL_02875 174830 179071 -1 Putative toxin subunit Morganella morganii S5
13 group_3416 HKOGLL_10175 98180 102673 -1 Salmonella virulence plasmid 65kDa B protein Morganella morganii S5
14 group_111 HKOGLL_10200 117052 121494 -1 Toxin subunit Morganella morganii S5