PF03458


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03458, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03458
Description Glycine transporter

Occurence in the database

PF03458 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1724 FBDBKF_12035 58022 58639 1 yadS Uncharacterized membrane protein YeiH Morganella morganii S1
1 group_1724 EHELCC_14270 76066 76683 -1 yadS Uncharacterized membrane protein YeiH Morganella morganii S2
2 group_1724 NLDBIP_15365 80003 80620 -1 yadS Uncharacterized membrane protein YeiH Morganella morganii S4
3 group_1724 LHKJJB_15245 58022 58639 1 yadS Uncharacterized membrane protein YeiH Morganella morganii S3
4 group_1724 HKOGLL_14365 44685 45302 1 yadS Uncharacterized membrane protein YeiH Morganella morganii S5
5 group_1724 F4V73_RS14620 157411 158028 -1 trimeric intracellular cation channel family protein Morganella psychrotolerans
6 group_1724 PMI_RS14140 3139044 3139661 1 trimeric intracellular cation channel family protein Proteus mirabilis HI4320