PF02965


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02965, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02965
Description Vitamin B12 dependent methionine synthase, activation domain

Occurence in the database

PF02965 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2415 FBDBKF_19505 4175 7855 1 metH methionine synthase Morganella morganii S1
1 group_2415 EHELCC_16450 4175 7855 1 metH methionine synthase Morganella morganii S2
2 group_2415 NLDBIP_16660 4175 7855 1 metH methionine synthase Morganella morganii S4
3 group_2415 LHKJJB_16810 60655 64335 -1 metH methionine synthase Morganella morganii S3
4 group_2415 HKOGLL_18805 4175 7855 1 metH methionine synthase Morganella morganii S5
5 group_2415 F4V73_RS18620 66573 70253 -1 metH methionine synthase Morganella psychrotolerans
6 group_2415 PMI_RS13595 3016297 3019968 -1 metH methionine synthase Proteus mirabilis HI4320