PF02684


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02684, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02684
Description Lipid-A-disaccharide synthetase

Occurence in the database

PF02684 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1050 FBDBKF_05945 14399 15553 -1 lpxB lipid-A-disaccharide synthase Morganella morganii S1
1 group_1050 EHELCC_08990 14971 16125 -1 lpxB lipid-A-disaccharide synthase Morganella morganii S2
2 group_1050 NLDBIP_09370 14971 16125 -1 lpxB lipid-A-disaccharide synthase Morganella morganii S4
3 group_1050 LHKJJB_08385 201113 202267 1 lpxB lipid-A-disaccharide synthase Morganella morganii S3
4 group_1050 HKOGLL_07935 201113 202267 1 lpxB lipid-A-disaccharide synthase Morganella morganii S5
5 group_1050 F4V73_RS15950 197901 199055 1 lpxB lipid-A-disaccharide synthase Morganella psychrotolerans
6 group_1050 PMI_RS11220 2469901 2471073 -1 lpxB lipid-A-disaccharide synthase Proteus mirabilis HI4320