PF02424


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02424, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02424
Description ApbE family

Occurence in the database

PF02424 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2020 FBDBKF_15160 42630 43667 1 apbE FAD:protein FMN transferase ApbE Morganella morganii S1
1 group_2020 EHELCC_11085 41239 42276 -1 apbE FAD:protein FMN transferase ApbE Morganella morganii S2
2 group_2020 NLDBIP_11430 41239 42276 -1 apbE FAD:protein FMN transferase ApbE Morganella morganii S4
3 group_2020 LHKJJB_11290 41239 42276 -1 apbE FAD:protein FMN transferase ApbE Morganella morganii S3
4 group_2020 HKOGLL_09900 41239 42276 -1 apbE FAD:protein FMN transferase ApbE Morganella morganii S5
5 group_2020 F4V73_RS12285 40944 41984 -1 FAD:protein FMN transferase Morganella psychrotolerans
6 group_2020 PMI_RS01715 407737 408759 1 FAD:protein FMN transferase Proteus mirabilis HI4320