PF02325


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02325, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02325
Description YGGT family

Occurence in the database

PF02325 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1998 FBDBKF_15035 17912 18460 -1 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family Morganella morganii S1
1 group_1998 EHELCC_11210 66446 66994 1 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family Morganella morganii S2
2 group_1998 NLDBIP_11555 66446 66994 1 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family Morganella morganii S4
3 group_1998 LHKJJB_11415 66446 66994 1 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family Morganella morganii S3
4 group_1998 HKOGLL_10025 66446 66994 1 yggT Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family Morganella morganii S5
5 group_1998 F4V73_RS12415 67139 67687 1 YggT family protein Morganella psychrotolerans
6 group_1998 PMI_RS01595 384724 385287 -1 YggT family protein Proteus mirabilis HI4320