PF02272


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02272, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02272
Description DHHA1 domain

Occurence in the database

PF02272 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_816 FBDBKF_04090 3326 5059 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S1
1 group_2034 FBDBKF_15240 59895 62522 1 alaS alanine--tRNA ligase Morganella morganii S1
2 group_816 EHELCC_05380 62783 64516 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S2
3 group_2034 EHELCC_11005 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S2
4 group_816 NLDBIP_05700 103848 105581 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S4
5 group_2034 NLDBIP_11350 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S4
6 group_816 LHKJJB_02580 81372 83105 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S3
7 group_2034 LHKJJB_11210 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S3
8 group_816 HKOGLL_06055 3236 4969 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella morganii S5
9 group_2034 HKOGLL_09820 22384 25011 -1 alaS alanine--tRNA ligase Morganella morganii S5
10 group_816 F4V73_RS08530 1761313 1763046 -1 recJ single-stranded-DNA-specific exonuclease RecJ Morganella psychrotolerans
11 group_2034 F4V73_RS12205 21879 24506 -1 alaS alanine--tRNA ligase Morganella psychrotolerans
12 group_2034 PMI_RS01800 427567 430194 1 alaS alanine--tRNA ligase Proteus mirabilis HI4320
13 group_816 PMI_RS09910 2149944 2151677 -1 recJ single-stranded-DNA-specific exonuclease RecJ Proteus mirabilis HI4320