PF01938


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01938, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01938
Description TRAM domain

Occurence in the database

PF01938 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1537 FBDBKF_09970 86693 88132 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S1
1 group_1874 FBDBKF_13990 94602 95984 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S1
2 group_1537 EHELCC_04770 278658 280097 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S2
3 group_1874 EHELCC_11665 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S2
4 group_1537 NLDBIP_04770 278454 279893 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S4
5 group_1874 NLDBIP_12005 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S4
6 group_1874 LHKJJB_11865 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S3
7 group_1537 LHKJJB_13860 55485 56924 -1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S3
8 group_1874 HKOGLL_10480 179478 180860 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella morganii S5
9 group_1537 HKOGLL_12675 87474 88913 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S5
10 group_1537 F4V73_RS00375 84472 85911 -1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella psychrotolerans
11 group_1874 F4V73_RS12845 172118 173458 -1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Morganella psychrotolerans
12 group_1874 PMI_RS01040 256105 257430 1 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Proteus mirabilis HI4320
13 group_1537 PMI_RS02205 514549 515979 -1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Proteus mirabilis HI4320