PF01842


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01842, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01842
Description ACT domain

Occurence in the database

PF01842 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_973 FBDBKF_05375 83964 84812 1 purU formyltetrahydrofolate deformylase Morganella morganii S1
1 group_1064 FBDBKF_06030 30838 33492 1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Morganella morganii S1
2 group_1064 EHELCC_09075 31410 34064 1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Morganella morganii S2
3 group_973 EHELCC_12215 96682 97530 -1 purU formyltetrahydrofolate deformylase Morganella morganii S2
4 group_1064 NLDBIP_09455 31410 34064 1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Morganella morganii S4
5 group_973 NLDBIP_12555 96637 97485 -1 purU formyltetrahydrofolate deformylase Morganella morganii S4
6 group_1064 LHKJJB_08300 183174 185828 -1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Morganella morganii S3
7 group_973 LHKJJB_12415 96682 97530 -1 purU formyltetrahydrofolate deformylase Morganella morganii S3
8 group_1064 HKOGLL_07850 183174 185828 -1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Morganella morganii S5
9 group_973 HKOGLL_11030 96682 97530 -1 purU formyltetrahydrofolate deformylase Morganella morganii S5
10 group_973 F4V73_RS05830 1240868 1241716 1 purU formyltetrahydrofolate deformylase Morganella psychrotolerans
11 group_1064 F4V73_RS15875 180413 183067 -1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Morganella psychrotolerans
12 group_973 PMI_RS07230 1583345 1584193 1 purU formyltetrahydrofolate deformylase Proteus mirabilis HI4320
13 group_1064 PMI_RS11295 2485854 2488499 1 glnD bifunctional uridylyltransferase/uridylyl-removing protein GlnD Proteus mirabilis HI4320