PF01541


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01541, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01541
Description GIY-YIG catalytic domain

Occurence in the database

PF01541 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1419 FBDBKF_08765 134254 134574 -1 yhbQ putative endonuclease, GIY-YIG superfamily Morganella morganii S1
1 group_2095 FBDBKF_15765 4487 6334 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S1
2 group_1419 EHELCC_12760 29151 29471 1 yhbQ putative endonuclease, GIY-YIG superfamily Morganella morganii S2
3 group_2095 EHELCC_17680 38416 40263 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S2
4 group_1419 NLDBIP_13100 29151 29471 1 yhbQ putative endonuclease, GIY-YIG superfamily Morganella morganii S4
5 group_2095 NLDBIP_19350 14361 16208 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S4
6 group_1419 LHKJJB_13455 132972 133292 -1 yhbQ putative endonuclease, GIY-YIG superfamily Morganella morganii S3
7 group_2095 LHKJJB_18120 38416 40263 1 uvrC excinuclease ABC subunit UvrC Morganella morganii S3
8 group_1419 HKOGLL_11575 29151 29471 1 yhbQ putative endonuclease, GIY-YIG superfamily Morganella morganii S5
9 group_2095 HKOGLL_18960 1791 3638 -1 uvrC excinuclease ABC subunit UvrC Morganella morganii S5
10 group_2095 F4V73_RS07925 1650689 1652536 -1 uvrC excinuclease ABC subunit UvrC Morganella psychrotolerans
11 group_1419 F4V73_RS09980 102316 102636 -1 GIY-YIG nuclease family protein Morganella psychrotolerans
12 group_2095 PMI_RS07400 1614670 1616502 -1 uvrC excinuclease ABC subunit UvrC Proteus mirabilis HI4320
13 group_1419 PMI_RS17170 3775674 3775955 -1 GIY-YIG nuclease family protein Proteus mirabilis HI4320