PF01402


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01402, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01402
Description Ribbon-helix-helix protein, copG family

Occurence in the database

PF01402 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1531 FBDBKF_09895 74773 75237 1 ybfE LexA regulated protein Morganella morganii S1
1 group_1531 EHELCC_04695 266738 267202 1 ybfE LexA regulated protein Morganella morganii S2
2 group_1531 NLDBIP_04695 266534 266998 1 ybfE LexA regulated protein Morganella morganii S4
3 group_1531 LHKJJB_13935 68380 68844 -1 ybfE LexA regulated protein Morganella morganii S3
4 group_1531 HKOGLL_12600 75554 76018 1 ybfE LexA regulated protein Morganella morganii S5
5 group_1531 F4V73_RS00455 97397 97690 -1 ybfE LexA regulated protein Morganella psychrotolerans
6 group_1531 PMI_RS02685 587115 587414 -1 ybfE LexA regulated protein Proteus mirabilis HI4320