PF01297


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01297, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01297
Description Zinc-uptake complex component A periplasmic

Occurence in the database

PF01297 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_639 FBDBKF_02085 104760 105674 1 znuA zinc ABC transporter substrate-binding protein ZnuA Morganella morganii S1
1 group_1813 FBDBKF_13445 67685 68614 1 znuA ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA Morganella morganii S1
2 group_639 EHELCC_02555 492580 493494 1 znuA zinc ABC transporter substrate-binding protein ZnuA Morganella morganii S2
3 group_1813 EHELCC_08650 206577 207506 -1 znuA ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA Morganella morganii S2
4 group_639 NLDBIP_00905 186642 187556 -1 znuA zinc ABC transporter substrate-binding protein ZnuA Morganella morganii S4
5 group_1813 NLDBIP_08975 206577 207506 -1 znuA ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA Morganella morganii S4
6 group_639 LHKJJB_01130 205129 206043 1 znuA zinc ABC transporter substrate-binding protein ZnuA Morganella morganii S3
7 group_1813 LHKJJB_05290 49653 50582 1 znuA ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA Morganella morganii S3
8 group_639 HKOGLL_01170 210640 211554 1 znuA zinc ABC transporter substrate-binding protein ZnuA Morganella morganii S5
9 group_1813 HKOGLL_05625 191168 192097 -1 znuA ABC-type Zn uptake system ZnuABC, Zn-binding component ZnuA Morganella morganii S5
10 group_1813 F4V73_RS03320 707360 708289 -1 metal ABC transporter substrate-binding protein Morganella psychrotolerans
11 group_639 F4V73_RS04450 940766 941680 1 znuA zinc ABC transporter substrate-binding protein ZnuA Morganella psychrotolerans
12 group_1813 PMI_RS04990 1092069 1092977 -1 metal ABC transporter substrate-binding protein Proteus mirabilis HI4320
13 group_639 PMI_RS05560 1212248 1213192 1 znuA zinc ABC transporter substrate-binding protein ZnuA Proteus mirabilis HI4320