PF01220


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01220, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01220
Description Dehydroquinase class II

Occurence in the database

PF01220 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_753 FBDBKF_03355 73361 73819 1 aroQ type II 3-dehydroquinate dehydratase Morganella morganii S1
1 group_753 EHELCC_07180 173284 173742 -1 aroQ type II 3-dehydroquinate dehydratase Morganella morganii S2
2 group_753 NLDBIP_07505 173157 173615 -1 aroQ type II 3-dehydroquinate dehydratase Morganella morganii S4
3 group_753 LHKJJB_07040 136903 137361 -1 aroQ type II 3-dehydroquinate dehydratase Morganella morganii S3
4 group_753 HKOGLL_03890 96026 96484 1 aroQ type II 3-dehydroquinate dehydratase Morganella morganii S5
5 group_753 F4V73_RS11575 464993 465451 -1 aroQ type II 3-dehydroquinate dehydratase Morganella psychrotolerans
6 group_753 PMI_RS18055 3965931 3966374 -1 aroQ type II 3-dehydroquinate dehydratase Proteus mirabilis HI4320