PF01202


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01202, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01202
Description Shikimate kinase

Occurence in the database

PF01202 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1447 FBDBKF_09200 70351 70893 -1 gntK gluconokinase Morganella morganii S1
1 group_1596 FBDBKF_10410 38510 39034 1 aroK shikimate kinase AroK Morganella morganii S1
2 group_2030 FBDBKF_15215 53798 54331 1 aroL shikimate kinase AroL Morganella morganii S1
3 group_1447 EHELCC_10210 75211 75753 1 gntK gluconokinase Morganella morganii S2
4 group_2030 EHELCC_11030 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S2
5 group_1596 EHELCC_14745 38500 39024 1 aroK shikimate kinase AroK Morganella morganii S2
6 group_1447 NLDBIP_10555 53482 54024 1 gntK gluconokinase Morganella morganii S4
7 group_2030 NLDBIP_11375 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S4
8 group_1596 NLDBIP_14575 38500 39024 1 aroK shikimate kinase AroK Morganella morganii S4
9 group_1447 LHKJJB_10800 137504 138046 -1 gntK gluconokinase Morganella morganii S3
10 group_2030 LHKJJB_11235 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S3
11 group_1596 LHKJJB_14770 102702 103226 -1 aroK shikimate kinase AroK Morganella morganii S3
12 group_2030 HKOGLL_09845 30575 31108 -1 aroL shikimate kinase AroL Morganella morganii S5
13 group_1596 HKOGLL_13390 102702 103226 -1 aroK shikimate kinase AroK Morganella morganii S5
14 group_1447 HKOGLL_13860 70805 71347 -1 gntK gluconokinase Morganella morganii S5
15 group_1447 F4V73_RS10770 285403 285945 1 gntK gluconokinase Morganella psychrotolerans
16 group_2030 F4V73_RS12230 30050 30583 -1 aroL shikimate kinase AroL Morganella psychrotolerans
17 group_1596 F4V73_RS14105 35206 35730 1 aroK shikimate kinase AroK Morganella psychrotolerans
18 group_2030 PMI_RS01775 420975 421487 1 aroL shikimate kinase AroL Proteus mirabilis HI4320
19 group_1596 PMI_RS14970 3323307 3323828 1 aroK shikimate kinase AroK Proteus mirabilis HI4320