PF01176


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01176, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01176
Description Translation initiation factor 1A / IF-1

Occurence in the database

PF01176 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1215 FBDBKF_07070 78821 79039 -1 infA translation initiation factor IF-1 Morganella morganii S1
1 group_1215 EHELCC_03900 107147 107365 1 infA translation initiation factor IF-1 Morganella morganii S2
2 group_1215 NLDBIP_03900 106943 107161 1 infA translation initiation factor IF-1 Morganella morganii S4
3 group_1215 LHKJJB_09730 107057 107275 1 infA translation initiation factor IF-1 Morganella morganii S3
4 group_1215 HKOGLL_09245 83777 83995 -1 infA translation initiation factor IF-1 Morganella morganii S5
5 group_1215 F4V73_RS01255 266624 266842 -1 infA translation initiation factor IF-1 Morganella psychrotolerans
6 group_1215 PMI_RS03400 751597 751815 -1 infA translation initiation factor IF-1 Proteus mirabilis HI4320