PF01168


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01168, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01168
Description Alanine racemase, N-terminal domain

Occurence in the database

PF01168 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_273 FBDBKF_05460 101964 103034 -1 alr alanine racemase Morganella morganii S1
1 group_1999 FBDBKF_15040 18541 19239 -1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S1
2 group_2228 FBDBKF_17045 41014 42093 -1 alr alanine racemase Morganella morganii S1
3 group_1999 EHELCC_11205 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S2
4 group_273 EHELCC_12130 78460 79530 1 alr alanine racemase Morganella morganii S2
5 group_2228 EHELCC_16545 26417 27496 1 alr alanine racemase Morganella morganii S2
6 group_1999 NLDBIP_11550 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S4
7 group_273 NLDBIP_12470 78415 79485 1 alr alanine racemase Morganella morganii S4
8 group_2228 NLDBIP_16755 26417 27496 1 alr alanine racemase Morganella morganii S4
9 group_1999 LHKJJB_11410 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S3
10 group_273 LHKJJB_12330 78460 79530 1 alr alanine racemase Morganella morganii S3
11 group_2228 LHKJJB_16715 41014 42093 -1 alr alanine racemase Morganella morganii S3
12 group_1999 HKOGLL_10020 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S5
13 group_273 HKOGLL_10945 78460 79530 1 alr alanine racemase Morganella morganii S5
14 group_2228 HKOGLL_17680 41014 42093 -1 alr alanine racemase Morganella morganii S5
15 group_273 F4V73_RS03835 811842 812912 1 alr alanine racemase Morganella psychrotolerans
16 group_1999 F4V73_RS12410 66358 67056 1 YggS family pyridoxal phosphate-dependent enzyme Morganella psychrotolerans
17 group_2228 F4V73_RS18525 41933 43012 -1 alr alanine racemase Morganella psychrotolerans
18 group_1999 PMI_RS01605 386143 386841 -1 YggS family pyridoxal phosphate-dependent enzyme Proteus mirabilis HI4320
19 group_273 PMI_RS07310 1601233 1602345 -1 alr alanine racemase Proteus mirabilis HI4320
20 group_273 PMI_RS08700 1905008 1906231 -1 alr alanine racemase Proteus mirabilis HI4320
21 group_2228 PMI_RS13515 2995314 2996405 1 alr alanine racemase Proteus mirabilis HI4320