PF01165


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01165, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01165
Description Ribosomal protein S21

Occurence in the database

PF01165 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2280 FBDBKF_17520 38170 38385 1 rpsU 30S ribosomal protein S21 Morganella morganii S1
1 group_2280 EHELCC_17415 38170 38385 1 rpsU 30S ribosomal protein S21 Morganella morganii S2
2 group_2280 NLDBIP_17780 4411 4626 -1 rpsU 30S ribosomal protein S21 Morganella morganii S4
3 group_2280 LHKJJB_17700 4409 4624 -1 rpsU 30S ribosomal protein S21 Morganella morganii S3
4 group_2280 HKOGLL_17710 4409 4624 -1 rpsU 30S ribosomal protein S21 Morganella morganii S5
5 group_2280 F4V73_RS16700 162062 162277 1 rpsU 30S ribosomal protein S21 Morganella psychrotolerans
6 group_2280 PMI_RS11720 2589595 2589810 1 rpsU 30S ribosomal protein S21 Proteus mirabilis HI4320