PF01008


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01008, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01008
Description Initiation factor 2 subunit family

Occurence in the database

PF01008 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2661 FBDBKF_04640 127671 128780 1 mtnA S-methyl-5-thioribose-1-phosphate isomerase Morganella morganii S1
1 group_2661 EHELCC_05930 187128 188237 1 mtnA S-methyl-5-thioribose-1-phosphate isomerase Morganella morganii S2
2 group_2661 NLDBIP_06250 228193 229302 1 mtnA S-methyl-5-thioribose-1-phosphate isomerase Morganella morganii S4
3 group_2661 LHKJJB_03130 205717 206826 1 mtnA S-methyl-5-thioribose-1-phosphate isomerase Morganella morganii S3
4 group_2661 HKOGLL_06605 127581 128690 1 mtnA S-methyl-5-thioribose-1-phosphate isomerase Morganella morganii S5
5 group_2661 F4V73_RS09090 1901263 1902372 1 mtnA S-methyl-5-thioribose-1-phosphate isomerase Morganella psychrotolerans