PF00842


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00842, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00842
Description Alanine racemase, C-terminal domain

Occurence in the database

PF00842 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_273 FBDBKF_05460 101964 103034 -1 alr alanine racemase Morganella morganii S1
1 group_2228 FBDBKF_17045 41014 42093 -1 alr alanine racemase Morganella morganii S1
2 group_273 EHELCC_12130 78460 79530 1 alr alanine racemase Morganella morganii S2
3 group_2228 EHELCC_16545 26417 27496 1 alr alanine racemase Morganella morganii S2
4 group_273 NLDBIP_12470 78415 79485 1 alr alanine racemase Morganella morganii S4
5 group_2228 NLDBIP_16755 26417 27496 1 alr alanine racemase Morganella morganii S4
6 group_273 LHKJJB_12330 78460 79530 1 alr alanine racemase Morganella morganii S3
7 group_2228 LHKJJB_16715 41014 42093 -1 alr alanine racemase Morganella morganii S3
8 group_273 HKOGLL_10945 78460 79530 1 alr alanine racemase Morganella morganii S5
9 group_2228 HKOGLL_17680 41014 42093 -1 alr alanine racemase Morganella morganii S5
10 group_273 F4V73_RS03835 811842 812912 1 alr alanine racemase Morganella psychrotolerans
11 group_2228 F4V73_RS18525 41933 43012 -1 alr alanine racemase Morganella psychrotolerans
12 group_273 PMI_RS07310 1601233 1602345 -1 alr alanine racemase Proteus mirabilis HI4320
13 group_273 PMI_RS08700 1905008 1906231 -1 alr alanine racemase Proteus mirabilis HI4320
14 group_2228 PMI_RS13515 2995314 2996405 1 alr alanine racemase Proteus mirabilis HI4320