PF00830


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00830, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00830
Description Ribosomal L28 family

Occurence in the database

PF00830 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2159 FBDBKF_16245 37848 38084 1 rpmB 50S ribosomal protein L28 Morganella morganii S1
1 group_2159 EHELCC_16280 37848 38084 1 rpmB 50S ribosomal protein L28 Morganella morganii S2
2 group_2159 NLDBIP_17060 24086 24322 -1 rpmB 50S ribosomal protein L28 Morganella morganii S4
3 group_2159 LHKJJB_16980 27188 27424 -1 rpmB 50S ribosomal protein L28 Morganella morganii S3
4 group_2159 HKOGLL_16860 37848 38084 1 rpmB 50S ribosomal protein L28 Morganella morganii S5
5 group_2159 F4V73_RS17350 102810 103046 -1 rpmB 50S ribosomal protein L28 Morganella psychrotolerans
6 group_2159 PMI_RS15610 3470258 3470494 1 rpmB 50S ribosomal protein L28 Proteus mirabilis HI4320