PF00750


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00750, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00750
Description tRNA synthetases class I (R)

Occurence in the database

PF00750 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_625 FBDBKF_02005 88476 90206 -1 argS arginine--tRNA ligase Morganella morganii S1
1 group_625 EHELCC_02475 476296 478026 -1 argS arginine--tRNA ligase Morganella morganii S2
2 group_625 NLDBIP_00985 202110 203840 1 argS arginine--tRNA ligase Morganella morganii S4
3 group_625 LHKJJB_01050 188845 190575 -1 argS arginine--tRNA ligase Morganella morganii S3
4 group_625 HKOGLL_01090 194356 196086 -1 argS arginine--tRNA ligase Morganella morganii S5
5 group_625 F4V73_RS04370 923915 925645 -1 argS arginine--tRNA ligase Morganella psychrotolerans
6 group_625 PMI_RS05350 1169911 1171641 -1 argS arginine--tRNA ligase Proteus mirabilis HI4320