PF00623


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00623, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00623
Description RNA polymerase Rpb1, domain 2

Occurence in the database

PF00623 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2290 FBDBKF_17585 8975 13201 1 rpoC DNA-directed RNA polymerase subunit beta' Morganella morganii S1
1 group_2290 EHELCC_18070 8351 12577 1 rpoC DNA-directed RNA polymerase subunit beta' Morganella morganii S2
2 group_2290 NLDBIP_18080 26160 30386 -1 rpoC DNA-directed RNA polymerase subunit beta' Morganella morganii S4
3 group_2290 LHKJJB_18275 26160 30386 -1 rpoC DNA-directed RNA polymerase subunit beta' Morganella morganii S3
4 group_2290 HKOGLL_17925 8351 12577 1 rpoC DNA-directed RNA polymerase subunit beta' Morganella morganii S5
5 group_2290 F4V73_RS14965 227535 231758 1 rpoC DNA-directed RNA polymerase subunit beta' Morganella psychrotolerans
6 group_2290 PMI_RS13750 3053462 3057691 -1 rpoC DNA-directed RNA polymerase subunit beta' Proteus mirabilis HI4320