PF00587


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00587, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00587
Description tRNA synthetase class II core domain (G, H, P, S and T)

Occurence in the database

PF00587 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1045 FBDBKF_05910 4983 6704 1 proS proline--tRNA ligase Morganella morganii S1
1 group_1223 FBDBKF_07115 91421 92713 1 serS serine--tRNA ligase Morganella morganii S1
2 group_1811 FBDBKF_13430 62469 64400 -1 thrS threonine--tRNA ligase Morganella morganii S1
3 group_1223 EHELCC_03855 93473 94765 -1 serS serine--tRNA ligase Morganella morganii S2
4 group_1811 EHELCC_08665 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S2
5 group_1045 EHELCC_08955 5555 7276 1 proS proline--tRNA ligase Morganella morganii S2
6 group_1223 NLDBIP_03855 93269 94561 -1 serS serine--tRNA ligase Morganella morganii S4
7 group_1811 NLDBIP_08990 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S4
8 group_1045 NLDBIP_09335 5555 7276 1 proS proline--tRNA ligase Morganella morganii S4
9 group_1811 LHKJJB_05275 44437 46368 -1 thrS threonine--tRNA ligase Morganella morganii S3
10 group_1045 LHKJJB_08420 209962 211683 -1 proS proline--tRNA ligase Morganella morganii S3
11 group_1223 LHKJJB_09685 93383 94675 -1 serS serine--tRNA ligase Morganella morganii S3
12 group_1811 HKOGLL_05640 195382 197313 1 thrS threonine--tRNA ligase Morganella morganii S5
13 group_1045 HKOGLL_07970 209962 211683 -1 proS proline--tRNA ligase Morganella morganii S5
14 group_1223 HKOGLL_09290 96377 97669 1 serS serine--tRNA ligase Morganella morganii S5
15 group_1223 F4V73_RS01300 279296 280588 1 serS serine--tRNA ligase Morganella psychrotolerans
16 group_1811 F4V73_RS03335 711415 713343 1 thrS threonine--tRNA ligase Morganella psychrotolerans
17 group_1045 F4V73_RS15985 206750 208471 -1 proS proline--tRNA ligase Morganella psychrotolerans
18 group_1223 PMI_RS03445 764633 765922 1 serS serine--tRNA ligase Proteus mirabilis HI4320
19 group_1811 PMI_RS05025 1098276 1100204 1 thrS threonine--tRNA ligase Proteus mirabilis HI4320
20 group_1045 PMI_RS11180 2459222 2460937 1 proS proline--tRNA ligase Proteus mirabilis HI4320