PF00573


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00573, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00573
Description Ribosomal protein L4/L1 family

Occurence in the database

PF00573 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2398 FBDBKF_19240 21838 22443 -1 rplD 50S ribosomal protein L4 Morganella morganii S1
1 group_2398 EHELCC_18985 21838 22443 -1 rplD 50S ribosomal protein L4 Morganella morganii S2
2 group_2398 NLDBIP_19000 21838 22443 -1 rplD 50S ribosomal protein L4 Morganella morganii S4
3 group_2398 LHKJJB_18855 21838 22443 -1 rplD 50S ribosomal protein L4 Morganella morganii S3
4 group_2398 HKOGLL_18590 21838 22443 -1 rplD 50S ribosomal protein L4 Morganella morganii S5
5 group_2398 F4V73_RS18925 7895 8500 1 rplD 50S ribosomal protein L4 Morganella psychrotolerans
6 group_2398 PMI_RS16155 3583378 3583983 1 rplD 50S ribosomal protein L4 Proteus mirabilis HI4320