PF00521


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00521, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00521
Description DNA gyrase/topoisomerase IV, subunit A

Occurence in the database

PF00521 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_435 FBDBKF_00390 54274 56889 -1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Morganella morganii S1
1 group_1106 FBDBKF_06305 93218 95479 -1 parC DNA topoisomerase IV subunit A Morganella morganii S1
2 group_435 EHELCC_01155 251979 254594 1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Morganella morganii S2
3 group_1106 EHELCC_09350 93790 96051 -1 parC DNA topoisomerase IV subunit A Morganella morganii S2
4 group_435 NLDBIP_02305 425542 428157 -1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Morganella morganii S4
5 group_1106 NLDBIP_09730 93790 96051 -1 parC DNA topoisomerase IV subunit A Morganella morganii S4
6 group_435 LHKJJB_03820 32783 35398 -1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Morganella morganii S3
7 group_1106 LHKJJB_08025 121187 123448 1 parC DNA topoisomerase IV subunit A Morganella morganii S3
8 group_435 HKOGLL_03225 252184 254799 1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Morganella morganii S5
9 group_1106 HKOGLL_07575 121187 123448 1 parC DNA topoisomerase IV subunit A Morganella morganii S5
10 group_435 F4V73_RS06370 1326524 1329154 -1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Morganella psychrotolerans
11 group_1106 F4V73_RS15615 118604 120865 1 parC DNA topoisomerase IV subunit A Morganella psychrotolerans
12 group_435 PMI_RS08500 1851648 1854281 -1 gyrA DNA topoisomerase (ATP-hydrolyzing) subunit A Proteus mirabilis HI4320