PF00488


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00488, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00488
Description MutS domain V

Occurence in the database

PF00488 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2348 FBDBKF_18960 8444 11005 1 mutS DNA mismatch repair protein MutS Morganella morganii S1
1 group_2348 EHELCC_18705 8444 11005 1 mutS DNA mismatch repair protein MutS Morganella morganii S2
2 group_2348 NLDBIP_18600 14508 17069 -1 mutS DNA mismatch repair protein MutS Morganella morganii S4
3 group_2348 LHKJJB_18575 8444 11005 1 mutS DNA mismatch repair protein MutS Morganella morganii S3
4 group_2348 HKOGLL_18310 8444 11005 1 mutS DNA mismatch repair protein MutS Morganella morganii S5
5 group_2348 F4V73_RS13870 409809 412370 1 mutS DNA mismatch repair protein MutS Morganella psychrotolerans
6 group_2348 PMI_RS11010 2422775 2425339 1 mutS DNA mismatch repair protein MutS Proteus mirabilis HI4320