PF00420


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00420, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00420
Description NADH-ubiquinone/plastoquinone oxidoreductase chain 4L

Occurence in the database

PF00420 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_794 FBDBKF_03725 147764 148414 -1 hyfE hydrogenase 4 membrane subunit Morganella morganii S1
1 group_1890 FBDBKF_14120 19558 19860 -1 nuoK NADH-quinone oxidoreductase subunit NuoK Morganella morganii S1
2 group_794 EHELCC_06810 98689 99339 1 hyfE hydrogenase 4 membrane subunit Morganella morganii S2
3 group_1890 EHELCC_08160 97125 97427 1 nuoK NADH-quinone oxidoreductase subunit NuoK Morganella morganii S2
4 group_794 NLDBIP_07135 98562 99212 1 hyfE hydrogenase 4 membrane subunit Morganella morganii S4
5 group_1890 NLDBIP_08485 97125 97427 1 nuoK NADH-quinone oxidoreductase subunit NuoK Morganella morganii S4
6 group_1890 LHKJJB_05780 159732 160034 -1 nuoK NADH-quinone oxidoreductase subunit NuoK Morganella morganii S3
7 group_794 LHKJJB_06670 62308 62958 1 hyfE hydrogenase 4 membrane subunit Morganella morganii S3
8 group_794 HKOGLL_04260 170429 171079 -1 hyfE hydrogenase 4 membrane subunit Morganella morganii S5
9 group_1890 HKOGLL_05135 81716 82018 1 nuoK NADH-quinone oxidoreductase subunit NuoK Morganella morganii S5
10 group_1890 F4V73_RS02815 594504 594806 1 nuoK NADH-quinone oxidoreductase subunit NuoK Morganella psychrotolerans
11 group_794 F4V73_RS11145 369023 369673 1 hyfE hydrogenase 4 membrane subunit Morganella psychrotolerans
12 group_1890 PMI_RS08600 1878550 1878852 -1 nuoK NADH-quinone oxidoreductase subunit NuoK Proteus mirabilis HI4320
13 group_794 PMI_RS12480 2767105 2767755 -1 hyfE hydrogenase 4 membrane subunit Proteus mirabilis HI4320