PF00390


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00390, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00390
Description Malic enzyme, N-terminal domain

Occurence in the database

PF00390 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1180 FBDBKF_06805 23653 25350 -1 sfcA Malic enzyme Morganella morganii S1
1 group_1822 FBDBKF_13505 77996 80275 -1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Morganella morganii S1
2 group_1180 EHELCC_04165 160836 162533 1 sfcA Malic enzyme Morganella morganii S2
3 group_1822 EHELCC_08590 194916 197195 1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Morganella morganii S2
4 group_1180 NLDBIP_04165 160632 162329 1 sfcA Malic enzyme Morganella morganii S4
5 group_1822 NLDBIP_08915 194916 197195 1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Morganella morganii S4
6 group_1822 LHKJJB_05350 59964 62243 -1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Morganella morganii S3
7 group_1180 LHKJJB_09995 160746 162443 1 sfcA Malic enzyme Morganella morganii S3
8 group_1822 HKOGLL_05565 179507 181786 1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Morganella morganii S5
9 group_1180 HKOGLL_08980 28609 30306 -1 sfcA Malic enzyme Morganella morganii S5
10 group_1180 F4V73_RS00945 200394 202091 -1 NAD-dependent malic enzyme Morganella psychrotolerans
11 group_1822 F4V73_RS03255 693704 695983 1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Morganella psychrotolerans
12 group_1180 PMI_RS03165 697927 699624 -1 NAD-dependent malic enzyme Proteus mirabilis HI4320
13 group_1822 PMI_RS07555 1649341 1651623 -1 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase Proteus mirabilis HI4320