PF00344


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00344, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00344
Description SecY

Occurence in the database

PF00344 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2379 FBDBKF_19145 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S1
1 group_2379 EHELCC_18890 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S2
2 group_2379 NLDBIP_18905 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S4
3 group_2379 LHKJJB_18760 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S3
4 group_2379 HKOGLL_18495 12906 14237 -1 secY preprotein translocase subunit SecY Morganella morganii S5
5 group_2379 F4V73_RS19020 16101 17432 1 secY preprotein translocase subunit SecY Morganella psychrotolerans
6 group_2379 PMI_RS16250 3591579 3592901 1 secY preprotein translocase subunit SecY Proteus mirabilis HI4320